orch:Installation Guide

Pre installation for Cantera 2.4

The 2.4 version of Cantera needs

• C++ Boost librairies (Version 1.68, the newer don't work with Cantera) to run properly.
• SCONS compiler
• fmt

$ git clone https://github.com/fmtlib/fmt.git
$ sudo mkdir /usr/local/include/fmt
$ sudo cp fmt/fmt/format.* /usr/local/include/fmt/

• Google test

get https://github.com/google/googletest/archive/release-1.8.0.tar.gz

tar xf release-1.8.0.tar.gz
cd googletest-release-1.8.0
cmake -DBUILD_SHARED_LIBS=ON .
make

puis cp -r * ~/orch/Cantera/ext/googltest ...

• eigen

visit https://eigen.tuxfamily.org/index.php?title=Main_Page
Download the 3.2.10 tar
tar -xvf 3.2.10.tar
cp file into orch/Cantera/ext

• Sundials

SCONS

https://sourceforge.net/projects/scons/files/scons/3.0.3/scons-3.0.3.tar.gz/download

cd scons-3.0.3
python setup.py install

BOOST LIBRARIES

https://www.boost.org/users/history/version_1_68_0.html

cd boost_1_68_0 
sh boostrap.sh
./b2

... patience ... the boost installation can be long

MPI librairies will be also needed for Stochastic configurations.

Installation procedure

The installation location should follow a given format. As the path to the orch folder must follow:

./workdir/orch$

The orch repository should be positioned in a workdir folder. So create the workdir folder in which you clone the orch repository from the gitlab:

/home/user/workdir$ git clone git@gitlab.coria-cfd.fr:orch/orch.git

Installation

The following steps must be completed before you can use ORCh:

• Compile Cantera :

with the compiler SCONS
command : scons build
be sure to add the right paths to boost when the first error message shows up

Moreover, some librairies have to be added in Cantera/ext in order to build Cantera :
$ git clone https://github.com/fmtlib/fmt.git
$ sudo mkdir /usr/local/include/fmt
$ sudo cp fmt/  orch/Cantera/ext

• Add to your .bashrc file:

export GTCOMB_CT_HOME=/home/yourloggin/orch/Cantera
export GTCOMB_CT_HOSTTYPE=$GTCOMB_CT_HOME/lib
export GTCOMB_CT_DATA=$GTCOMB_CT_HOME/data

• All the openmpi and gcc-compiler libraries must be available on your machine, typically you need something like below in your .bashrc file (some may already be there no need to duplicate):

source /opt/intel/composerxe/bin/compilervars.sh intel64
export INTEL_HOME="/opt/intel/composerxe"
export INTEL_INC="$INTEL_HOME/include"
export INTEL_LIB="$INTEL_HOME/lib"
export INTEL_BIN="$INTEL_HOME/bin"
export INTEL_MAN="$INTEL_HOME/man"
export PATH="$INTEL_BIN:$PATH"
export LIBRARY_PATH="$INTEL_LIB:$LIBRARY_PATH"
export LD_LIBRARY_PATH="$INTEL_LIB:$LD_LIBRARY_PATH"
export MANPATH="$INTEL_MAN:$MANPATH"

export MPI_HOME="/local/openmpi/intel-14.0.2/1.8.1"
export MPI_INC="$MPI_HOME/include"
export MPI_LIB="$MPI_HOME/lib"
export MPI_BIN="$MPI_HOME/bin"
export MPI_MAN="$MPI_HOME/share/man"
export PATH="$MPI_BIN:$PATH"
export LIBRARY_PATH="$MPI_LIB:$LIBRARY_PATH"
export LD_LIBRARY_PATH="$MPI_LIB:$LD_LIBRARY_PATH"
export MANPATH="$MPI_MAN:$MANPATH"

export HDF5_HOME="/local/hdf5/intel-14.0.2/1.8.12"
export HDF5_INC="$HDF5_HOME/include"
export HDF5_BIN="$HDF5_HOME/bin"
export HDF5_LIB="$HDF5_HOME/lib"
export PATH="$HDF5_BIN:$PATH"
export LIBRARY_PATH="$HDF5_LIB:$LIBRARY_PATH"
export LD_LIBRARY_PATH="$HDF5_LIB:$LD_LIBRARY_PATH"

export PAPI_HOME="/local/papi/intel-14.0.2/5.3.0"
export LANG=C
export LC_ALL=C
export CPLUS_INCLUDE_PATH=$CPLUS_INCLUDE_PATH:/usr/include/x86_64-linux-gnu/c++/4.8

• Check that the compilation of the ORCh package runs fine

 make clean 
 make