Outputs - Revision history

Seltz at 13:34, 1 February 2019

2019-02-01T13:34:04Z

Seltz: /* DRGEP species */

2019-01-21T17:10:16Z

‎DRGEP species

Seltz: /* DRGEP reaction */

2019-01-21T17:09:45Z

‎DRGEP reaction

Seltz: /* Optimisation */

2019-01-21T16:58:48Z

‎Optimisation

Seltz: /* Compute QSS Criteria */

2019-01-21T16:57:52Z

‎Compute QSS Criteria

Seltz: /* Get QSS file */

2019-01-21T16:57:12Z

‎Get QSS file

Seltz: /* Get QSS file */

2019-01-21T16:54:38Z

‎Get QSS file

Seltz at 16:51, 21 January 2019

2019-01-21T16:51:39Z

Seltz at 14:30, 2 January 2018

2018-01-02T14:30:52Z

Seltz at 14:20, 2 January 2018

2018-01-02T14:20:52Z

@@ Line 2: / Line 2: @@
 Once your "condition.cpp" is filled with the desired key words, you can run the code with
@@ Line 12: / Line 11: @@
 and
   ./mainProgram
 Note that the Optimisation step of PremixedFlames and all the steps of the multipleInlet configuration (except getQSSfile) can be launched in parallel, for example on 8 proc, with :

@@ Line 53: / Line 53: @@
 And the trajectories of the species chosen by the user in "SpeciesToPlot" compared to the trajectory of the reference scheme :
-  outputs/Premixed/RefVersus_DRGEP_Species20_Flame0.dat
+  outputs/Premixed/DRGEP_Species20_Flame0.dat
 == DRGEP reaction ==

@@ Line 82: / Line 82: @@
 And the trajectories of the species chosen by the user in "SpeciesToPlot" compared to the trajectory of the reference scheme :
-  outputs/Stochastic/RefVersusDRGEP_Reactions30_Inlet0.eps
+  outputs/Stochastic/DRGEP_Reactions30_Inlet0.eps
-  outputs/Stochastic/RefVersusDRGEP_Reactions30_Inlet1.eps
+  outputs/Stochastic/DRGEP_Reactions30_Inlet1.eps
 == Compute QSS Criteria ==

← Older revision		Revision as of 16:58, 21 January 2019
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	This step generates N elements of a population of analytic schemes at each generation with different Arrhenius factors. It is recommended to divide the elements on several processes in order to have a population as large as possible.		This step generates N elements of a population of analytic schemes at each generation with different Arrhenius factors. It is recommended to divide the elements on several processes in order to have a population as large as possible.
		+
		+	A log file is available during the optimisation step with all the fitnesses at each generation.

	The outputs of interest are all placed in the following directory :		The outputs of interest are all placed in the following directory :

← Older revision		Revision as of 16:57, 21 January 2019
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	During this step, the main program displays the QSS criteria of each species and their interaction with the other. If this criteria is close to 0, the species is a good candidate to be in quasi steady state assumption.		During this step, the main program displays the QSS criteria of each species and their interaction with the other. If this criteria is close to 0, the species is a good candidate to be in quasi steady state assumption.
		+
		+	A log file is also available at the end of this step.

	Moreover, the species selected for QSS assumption must be in linear interaction with transported species. So if a species like CH3O in the screenshot example is put to QSS assumption, all the species linked to CH3O like OH, O and H cannot be put in QSS assumption, even if their QSS criteria is low.		Moreover, the species selected for QSS assumption must be in linear interaction with transported species. So if a species like CH3O in the screenshot example is put to QSS assumption, all the species linked to CH3O like OH, O and H cannot be put in QSS assumption, even if their QSS criteria is low.

← Older revision		Revision as of 16:57, 21 January 2019
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	The trajectory plots against the reference scheme :		The trajectory plots against the reference scheme :

−	<code>~~RefVersusQSS12_Flame0~~.eps</code>	+	<code>QSS12_Flame0.eps</code>

← Older revision		Revision as of 16:54, 21 January 2019
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	Nota bene : The fitness displayed in the graphs is the one between the current reduced trajectories and the trajectories of the reference scheme chosen by the user.		Nota bene : The fitness displayed in the graphs is the one between the current reduced trajectories and the trajectories of the reference scheme chosen by the user.
−
−

	== Optimisation ==		== Optimisation ==

← Older revision		Revision as of 16:51, 21 January 2019
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−	Note that the Optimisation step of PremixedFlames and all the steps of the multipleInlet configuration can be launched in parallel, for example on 8 proc, with :	+	Note that the Optimisation step of PremixedFlames and all the steps of the multipleInlet configuration (except getQSSfile) can be launched in parallel, for example on 8 proc, with :

	mpirun -np 8 mainProgram		mpirun -np 8 mainProgram

@@ Line 17: / Line 17: @@
-Note that the Optimisation step of PremixedFlames and all the steps of the multipleInlet configuration can be launched in parallel, for example on 8 proc, with
+Note that the Optimisation step of PremixedFlames and all the steps of the multipleInlet configuration can be launched in parallel, for example on 8 proc, with :
   mpirun -np 8 mainProgram
@@ Line 23: / Line 23: @@
 If the main program is correctly running, your terminal should display the ORCh logo and all the information on your flame and your scheme.
-The outputs depends on the step you are running
+The outputs depends on the step you are running.
@@ Line 30: / Line 30: @@
 == Compute Trajectories ==
-This step calculates the trajectories of the wanted mechanism. The .dat files are directly written in the output directory under the name "Premixed_.dat" for the 1D premixed configuration and under the name "Trajectory_X.dat" for the 0D stochastic configuration, with X the number of the inlets
+This step simply calculates the trajectories of the wanted mechanism. The .dat files are directly written in the output directory under the name "Premixed_.dat" for the 1D premixed configuration and under the name "Trajectory_X.dat" for the 0D stochastic configuration, with X the number of the inlets.
 == DRGEP species ==
@@ Line 36: / Line 36: @@
 [[File:spec.png|300px|thumb|right|Exemple : List of the species with their interaction rate]]
-During this step, the main program will display every species of the scheme with the maximum of the interaction rates with the targeted species next to them. The interaction rates of targeted species are automatically set to 1. After that, new trajectories will be calculated with less and less species (until divergence with the reference trajectories), starting by the suppression of the less ranked ones.
+During this step, the main program will display every species of the scheme with the maximum of the interaction rates with the targeted species next to them. The interaction rates of targeted species and the species into reactants are automatically set to 1. After that, new trajectories will be calculated with less and less species (until divergence with the reference trajectories), starting by the suppression of the less ranked ones.
 Trajectories are then written in the repertory <code>/outputs/Premixed</code> or <code>/outputs/Stochastic</code> and new schemes in <code>/outputs/mechanisms</code>, with the name of the step and the number of species.
 Exemple :
@@ Line 48: / Line 50: @@
 The trajectory :
-  outputs/Premixed/Reduced_DRGEP_Species20.dat
+  outputs/Premixed/Reduced_DRGEP_Species20_0.dat
 And the trajectories of the species chosen by the user in "SpeciesToPlot" compared to the trajectory of the reference scheme :
-  outputs/Premixed/RefVersus_DRGEP_Species20.dat
+  outputs/Premixed/RefVersus_DRGEP_Species20_Flame0.dat
 == DRGEP reaction ==
@@ Line 62: / Line 64: @@
 Trajectories are then written in the repertory <code>/outputs/Premixed</code> or <code>/outputs/Stochastic</code> and new schemes in <code>/outputs/mechanisms</code>, with the name of the step and the number of reactions.
 Exemple :
@@ Line 107: / Line 111: @@
 the trajectory :
-<code> Reduced_QSS12.dat</code>
+<code> Reduced_QSS12_0.dat</code>
 The trajectory plots against the reference scheme :
-<code>RefVersusQSS12.eps</code>
+<code>RefVersusQSS12_Flame0.eps</code>
@@ Line 131: / Line 135: @@
 Trajectory plot of the best scheme at the third generation written in :
-  analytic_schemes/PLOTS/GEN3_POP0_FIT-1096.eps
+  analytic_schemes/PLOTS/GEN3_POP0_FIT-1096_Flame0.eps
 and the N analytic schemes divided on the p processes are calculated on the Ref files :

← Older revision		Revision as of 14:20, 2 January 2018
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	and		and

−	~~<code>~~
−	~~./mainProgram~~
−	~~</code>~~

		+	./mainProgram
		+
		+
		+	Note that the Optimisation step of PremixedFlames and all the steps of the multipleInlet configuration can be launched in parallel, for example on 8 proc, with
		+
		+	mpirun -np 8 mainProgram

	If the main program is correctly running, your terminal should display the ORCh logo and all the information on your flame and your scheme.		If the main program is correctly running, your terminal should display the ORCh logo and all the information on your flame and your scheme.